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Today, face editing is widely used to refine/alter photos in both professional and recreational settings. Yet it is also used to modify (and repost) existing online photos for cyberbullying. Our work considers an important open question: 'How can we support the collaborative use of face editing on social platforms while protecting against unacceptable edits and reposts by others?' This is challenging because, as our user study shows, users vary widely in their definition of what edits are (un)acceptable. Any global filter policy deployed by social platforms is unlikely to address the needs of all users, but hinders social interactions enabled by photo editing. Instead, we argue that face edit protection policies should be implemented by social platforms based on individual user preferences. When posting an original photo online, a user can choose to specify the types of face edits (dis)allowed on the photo. Social platforms use these per-photo edit policies to moderate future photo uploads, i.e., edited photos containing modifications that violate the original photo's policy are either blocked or shelved for user approval. Realizing this personalized protection, however, faces two immediate challenges: (1) how to accurately recognize specific modifications, if any, contained in a photo; and (2) how to associate an edited photo with its original photo (and thus the edit policy). We show that these challenges can be addressed by combining highly efficient hashing based image search and scalable semantic image comparison, and build a prototype protector (Alethia) covering nine edit types. Evaluations using IRB-approved user studies and data-driven experiments (on 839K face photos) show that Alethia accurately recognizes edited photos that violate user policies and induces a feeling of protection to study participants. This demonstrates the initial feasibility of personalized face edit protection. We also discuss current limitations and future directions to push the concept forward.

Measuring speed is a critical factor to reduce motion artifacts for dynamic scene capture. Phase-shifting methods have the advantage of providing high-accuracy and dense 3D point clouds, but the phase unwrapping process affects the measurement speed. This paper presents an absolute phase unwrapping method capable of using only three speckle-embedded phase-shifted patterns for high-speed three-dimensional (3D) shape measurement on a single-camera, single-projector structured light system. The proposed method obtains the wrapped phase of the object from the speckle-embedded three-step phase-shifted patterns. Next, it utilizes the Semi-Global Matching (SGM) algorithm to establish the coarse correspondence between the image of the object with the embedded speckle pattern and the pre-obtained image of a flat surface with the same embedded speckle pattern. Then, a computational framework uses the coarse correspondence information to determine the fringe order pixel by pixel. The experimental results demonstrated that the proposed method can achieve high-speed and high-quality 3D measurements of complex scenes.

Studying the signatures of evolution can help to understand genetic processes. Here, we demonstrate how the existence of balancing selection can be used to identify the breeding systems of fungi from genomic data. The breeding systems of fungi are controlled by self-incompatibility loci that determine mating types between potential mating partners, resulting in strong balancing selection at the loci. Within the fungal phylum Basidiomycota, two such self-incompatibility loci, namely HD MAT locus and P/R MAT locus, control mating types of gametes. Loss of function at one or both MAT loci results in different breeding systems and relaxes the MAT locus from balancing selection. By investigating the signatures of balancing selection at MAT loci, one can infer a species’ breeding system without culture-based studies. Nevertheless, the extreme sequence divergence among MAT alleles imposes challenges for retrieving full variants from both alleles when using the conventional read-mapping method. Therefore, we employed a combination of read-mapping and local de novo assembly to construct haplotypes of HD MAT alleles from genomes in suilloid fungi (genera Suillus and Rhizopogon). Genealogy and pairwise divergence of HD MAT alleles showed that the origins of mating types predate the split between these two closely related genera. High sequence divergence, trans-specific polymorphism, and the deeply diverging genealogy confirm the long-term functionality and multiallelic status of HD MAT locus in suilloid fungi. This work highlights a genomics approach to studying breeding systems regardless of the culturability of organisms based on the interplay between evolution and genetics.

This paper presents an absolute phase unwrapping method for high-speed three-dimensional (3D) shape measurement. This method uses three phase-shifted patterns and one binary random pattern on a single-camera, single-projector structured light system. We calculate the wrapped phase from phase-shifted images and determine the coarse correspondence through the digital image correlation (DIC) between the captured binary random pattern of the object and the pre-captured binary random pattern of a flat surface. We then developed a computational framework to determine fringe order number pixel by pixel using the coarse correspondence information. Since only one additional pattern is used, the proposed method can be used for high-speed 3D shape measurement. Experimental results successfully demonstrated that the proposed method can achieve high-speed and high-quality measurement of complex scenes.

Multi‐locus sequence data are widely used in fungal systematic and taxonomic studies to delimit species and infer evolutionary relationships. We developed and assessed the efficacy of a multi‐locus pooled sequencing method using PacBio long‐read high‐throughput sequencing. Samples included fresh and dried voucher specimens, cultures and archival DNA extracts of Agaricomycetes with an emphasis on the order Cantharellales. Of the 283 specimens sequenced, 93.6% successfully amplified at one or more loci with a mean of 3.3 loci amplified. Our method recovered multiple sequence variants representing alleles of rDNA loci and single copy protein‐coding genesrpb1,rpb2 andtef1. Within‐sample genetic variation differed by locus and taxonomic group, with the greatest genetic divergence observed among sequence variants ofrpb2 andtef1 from corticioid Cantharellales. Our method is a cost‐effective approach for generating accurate multi‐locus sequence data coupled with recovery of alleles from polymorphic samples and multi‐organism specimens. These results have important implications for understanding intra‐individual genomic variation among genetic loci commonly used in species delimitation of fungi.

Research on mycorrhizal symbiosis has been slowed by a lack of established study systems. To address this challenge, we have been developingSuillus, a widespread ecologically and economically relevant fungal genus primarily associated with the plant family Pinaceae, into a model system for studying ectomycorrhizal (ECM) associations. Over the last decade, we have compiled extensive genomic resources, culture libraries, a phenotype database, and protocols for manipulatingSuillusfungi with and without their tree partners. Our efforts have already resulted in a large number of publicly available genomes, transcriptomes, and respective annotations, as well as advances in our understanding of mycorrhizal partner specificity and host communication, fungal and plant nutrition, environmental adaptation, soil nutrient cycling, interspecific competition, and biological invasions. Here, we highlight the most significant recent findings enabled bySuillus, present a suite of protocols for working with the genus, and discuss howSuillusis emerging as an important model to elucidate the ecology and evolution of ECM interactions.